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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015945275.1_cds_XP_016487827.1_78523
CDS Infomation

[gene=LOC107807888] [db_xref=GeneID:107807888] [protein=probable starch synthase 4, chloroplastic/amyloplastic] [protein_id=XP_016487827.1] [location=join(4126..4280,6317..6515,7534..7615,7756..8417,8889..9011,9111..9186,9282..9507,9591..9642,10370..10492,10592..10667,10763..10947,11024..11218,11323..11394,12347..12556,13462..13587,14530..14679,14785..14846,14944..15019,15311..15487)] [gbkey=CDS]
Sequence

ATGGAGATGAAGCTCTCCAACTGTTTACCGAGCCAAAAATGGTGCGGAGGAGGAGCGCCT
TTTGTTAGACAAGTAAATGTTCGATTCTATCCACCGCCTTCTCAACGTTTGCTTCCACTT
CCAGCTTCCGGCAAAATGCGCCACCGCAACTTCAGTTTGCAGAACAAGAGACAACAAACC
AAGAAAATAAATATTGAACGCCCGGATGCTGATCTTCAGTCAAGTGATGCTGTAGATTCC
AATACGAAAAATATGTCCAAACAAAACCTATCAAGTTCAAATCAGGAAATCTCAATCAAA
GAAAATGTTGACACTTTGACAGAAGCCGAAAGCTCCGAGGAGATTAGTTATTTGTCTGTC
GACTCAAATGAGGAGGGACAACCTTCAAGTGTTCATCTTCAGGATTTGATTGGCATGATA
AGAAATGCAGAAAAGAATATTCATCTACTCAATGAAGCTCGTATTCGTGCATTAGAAGAT
CTTCAAATTGGAGAGAAAGAGGATTTGCATGGAGAGATCAACATTTTAGAAATGAAGCTG
GCAGAAACTGAAGCACGGCTCAGAGTTGCCGCCCAAGAAAAAATACATGTGGAACTTCTA
GAAGACCAGTTGGAAAAGTTGAAAAATGAATTGTCTAGCAGCAGAAGCAGTGAAGAAAAT
GTGCTTCATGTGAATAATTCAGTTCCTCTTTCAGATAATGATTCTGTTAAGTCACTGAGC
GAGGAACTTGATTCCTTAAGGAAAGAAAATATATTATTGAAAGAGGATCTTCAAGCGTTG
AAGTCAGAGCTTACTAATGTCAAGGAAACAGATGAACGCATTTTAATGCTAGAGAAAGAA
CGATCAGTTCTTGAATCTTCTGTAAGTGAGTTGGGATCTAAACTAGCTGCATCTCAGGAA
GATGTTTCAGAGCTCTCTGCCTTGAAATATGAGTGCAAAAATTTATATGAAAAGGTGGAA
CACTTACAAACATTGCTAGCTAAGGCAACTAAACAGGCAGATCAAGCAATATCAGTGCTA
CAACAAAACCAAGAGCTACGAGAAAAGGTTGATAGGCTTGAANATTATTGTGAATTGGTT
ATAGATCATCTTTTTATCGTAGGTGGTCTAGGGGATGTGGTGACAGGCCTTGGCAAGGCT
CTGCAGAAGAAAGGACACCTTGTGGAAATTGTTCTTCCTAAATATGATTGTATGCAGTAT
GAGTCAATTAAAGACATGAAGGCCTTAGATGTGGTTGTTGAGTCATACTTTGATGGTCGG
TTATACAAAAATAAGATCTGGACGGGCACTGTTGAAGGCCTTCCTGTCTATTTCATTGAG
CCTCAGCATCCTGGTAAATTCTTTGGGAGAGGACAACTTTATGGGGAGCACGATGATTTC
AAACGATTTTCATTCTTTAGCAGGGTAGCACTTGAGTTACTACTTCATGNCGGACGTATC
TGTGATGCATATATGTCATGCAAGGAAAAGAATGAACGTGAAATTATAGCGACATTTCTT
AAATTTACGTCATCGTCAACACGTCCGGGACTGCATATCATCCATATTGCAGCAGAGATG
GCGCCAGTTGCAAAGGTAGGTGGTCTAGGGGATGTGGTGACAGGTCTTGGCAAGGCTCTG
CAGAAGAAAGGACACCTTGTGGAAATTGTTCTTCCTAAATATGATTGTATGCAGTATGAG
TCAATTAAAGACATGAAGGCCTTAGATGTGGTTGTTGAGTCTTACTTTGATGGTCGGTTA
TACAAAAATAAGATCTGGACGGGCACTGTTGAAGGCCTTCCTGTCTATTTCATTGAGCCT
CAACATCCTGGTAAATTCTTCGGGAGAGGACAACTTTATGGGGAGCACGATGATTTCAAA
CGATTTTCATTCTTTAGCAGGGTAGCACTTGAGTTACTACTTCATGCTGAAAAGAAACCA
GATATAATTCATTGCCATGATTGGCAAACAGCTTTTGTTGCACCACTTTATTGGGATCTG
TATGTGCCAAAAGGATTGGACTCAGCGAGGATTTGCTTTACATGCCATAATTTTGAGTAT
CAAGGGACTGCACCAGCATCAGAATTAACATCTTGTGGTCTTGATGCTTATCACTTGAAC
AGACCAGACAGGATGCAGGACAATTCAGCAAATGATAGAATAAATTCCGTGAAGGGTGCA
ATTGTGTTTTCTAACATTGTTACCACAGTTTCACCAACTTATGCTCAAGAGGTCCGGACT
GCTCAGGGAGGAAAAGGACTTCATGCAACAATTAACTCCCACTCTAAGAAATTTGTCGGA
ATTCTGAATGGAATTGATACTGATGCTTGGAATCCTGCTTCTGATAATTTTCTTAAGGTC
CAGTACAGTGCCAGTGACAGAGAGGGGAAATTAGAAAATAAAGAAGCTTTAAGAAGACTT
CTAGGGCTCTCTTCTTCTGAAATTAGACGACCATTGGTTGGTTGCATAACAAGACTGGTT
CCTCAAAAGGGTGTGCATCTTATTAGACATGCCATATATAGGACTTTGGAGTTGGGAGGT
CAATTTGTTCTTCTTGGTTCTAGTCCAGTGCCACATATTCAGAGGGAGTTTGAGGATATC
AGAAACCATTTCCAAAATCACGAACATGCTCGGTTGGTATTAAAGTATGATGAGGCTCTT
TCCCATTTGATTTATGCAGCATCTGACATGCTTATCATCCCATCCATTTTTGAGCCTTGC
GGCCTTACTCAGATGATAGCGATGAGATATGGGTCTATACCAATTGCTAGGAAAACAGGG
GGCTTGAATGATAGTGTTTTCGATGTTGACGATGACACAATCCCGGATCAGTTTAGAAAT
GGATTTACATTTGTGACTGCTGATGAACAGGGATTCAACAATGCCTTGGAACGTGCATTT
AACTACTACATGAACAAGGCTGAGACTTGGAAAGAGCTGGTTCAGAAGGACATGAGCATA
GATTTTAGTTGGGATTCGTCAGCATCACAATATGAAGAACTTTACAATAGGGCTGTTTTG
AGAGCAAGAACTGCAAGTCGTAGTTGA

Peptide Sequence

PEP ID

XP_016487827.1
PEP Infomation

PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic [Nicotiana tabacum]
Sequence

MEMKLSNCLPSQKWCGGGAPFVRQVNVRFYPPPSQRLLPLPASGKMRHRNFSLQNKRQQT
KKINIERPDADLQSSDAVDSNTKNMSKQNLSSSNQEISIKENVDTLTEAESSEEISYLSV
DSNEEGQPSSVHLQDLIGMIRNAEKNIHLLNEARIRALEDLQIGEKEDLHGEINILEMKL
AETEARLRVAAQEKIHVELLEDQLEKLKNELSSSRSSEENVLHVNNSVPLSDNDSVKSLS
EELDSLRKENILLKEDLQALKSELTNVKETDERILMLEKERSVLESSVSELGSKLAASQE
DVSELSALKYECKNLYEKVEHLQTLLAKATKQADQAISVLQQNQELREKVDRLEXYCELV
IDHLFIVGGLGDVVTGLGKALQKKGHLVEIVLPKYDCMQYESIKDMKALDVVVESYFDGR
LYKNKIWTGTVEGLPVYFIEPQHPGKFFGRGQLYGEHDDFKRFSFFSRVALELLLHXGRI
CDAYMSCKEKNEREIIATFLKFTSSSTRPGLHIIHIAAEMAPVAKVGGLGDVVTGLGKAL
QKKGHLVEIVLPKYDCMQYESIKDMKALDVVVESYFDGRLYKNKIWTGTVEGLPVYFIEP
QHPGKFFGRGQLYGEHDDFKRFSFFSRVALELLLHAEKKPDIIHCHDWQTAFVAPLYWDL
YVPKGLDSARICFTCHNFEYQGTAPASELTSCGLDAYHLNRPDRMQDNSANDRINSVKGA
IVFSNIVTTVSPTYAQEVRTAQGGKGLHATINSHSKKFVGILNGIDTDAWNPASDNFLKV
QYSASDREGKLENKEALRRLLGLSSSEIRRPLVGCITRLVPQKGVHLIRHAIYRTLELGG
QFVLLGSSPVPHIQREFEDIRNHFQNHEHARLVLKYDEALSHLIYAASDMLIIPSIFEPC
GLTQMIAMRYGSIPIARKTGGLNDSVFDVDDDTIPDQFRNGFTFVTADEQGFNNALERAF
NYYMNKAETWKELVQKDMSIDFSWDSSASQYEELYNRAVLRARTASRS

Transcript Sequence

Gene sequence data has not been registered.